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Table 1 Simple statistics for single-nucleotide polymorphism (SNP) data by chromosome

From: Estimation of effective population size using single-nucleotide polymorphism (SNP) data in Jeju horse

Chromosome No. of SNPs Mean No. of SNP pairs Mean
Distance1 MAF2 HE3 r-square4   r-square5
1 3,509 53.0 0.24 0.33 0.25 6,154,786 0.02
2 2,463 49.1 0.25 0.34 0.29 3,031,953 0.02
3 2,234 53.5 0.25 0.34 0.27 2,494,261 0.02
4 2,185 49.7 0.24 0.33 0.28 2,386,020 0.02
5 1,909 52.2 0.25 0.34 0.26 1,821,186 0.02
6 1,762 48.1 0.24 0.33 0.25 1,551,441 0.02
7 1,887 52.2 0.24 0.33 0.28 1,779,441 0.02
8 1,946 48.2 0.25 0.34 0.27 1,892,485 0.03
9 1,767 47.2 0.26 0.34 0.29 1,560,261 0.03
10 1,688 49.7 0.24 0.33 0.27 1,423,828 0.03
11 1,332 46.0 0.24 0.34 0.27 886,446 0.03
12 622 53.0 0.25 0.34 0.21 193,131 0.03
13 826 51.4 0.24 0.33 0.20 340,725 0.03
14 1,954 47.7 0.24 0.34 0.28 1,908,081 0.03
15 1,841 49.6 0.24 0.33 0.26 1,693,720 0.02
16 1,775 49.2 0.24 0.33 0.25 1,574,425 0.02
17 1,598 50.5 0.25 0.33 0.31 1,276,003 0.03
18 1,532 53.8 0.24 0.33 0.27 1,172,746 0.02
19 1,225 48.9 0.24 0.33 0.26 749,700 0.03
20 1,252 51.0 0.25 0.34 0.26 783,126 0.02
21 1,257 45.6 0.24 0.33 0.25 789,396 0.03
22 1,036 48.1 0.24 0.34 0.24 536,130 0.02
23 1,097 50.4 0.25 0.34 0.28 601,156 0.03
24 1,039 44.5 0.25 0.34 0.25 539,241 0.03
25 737 53.2 0.24 0.33 0.25 271,216 0.03
26 684 61.0 0.24 0.33 0.22 233,586 0.03
27 778 51.1 0.25 0.34 0.25 302,253 0.03
28 867 52.9 0.24 0.33 0.27 375,411 0.03
29 579 58.0 0.24 0.33 0.23 167,331 0.03
30 593 50.7 0.24 0.33 0.23 175,528 0.03
31 452 55.1 0.25 0.33 0.20 101,926. 0.03
Overall 44,426 50.4 0.24 0.34 0.26 38,766,939 0.02
  1. 1Kilo base pairs (Kb) between adjacent SNPs, 2minor allele frequency, 3Expected heterozygosity, 4between adjacent SNP pairs, 5between all SNP pairs.