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Table 3 Average r2 values and ± standard deviations over different physical distances, pooled over all autosomes, in seven Iranian cattle breeds

From: Comparison of linkage disequilibrium levels in Iranian indigenous cattle using whole genome SNPs data

SNP pairs Distance

Breed

Sistani

Kermani

Najdi

Taleshi

Mazandarani

Kurdi

Sarabi

0-1 Kb

0.527 ± 0.396

0.499 ± 0.39

0.52 ± 0.387

0.546 ± 0.379

0.501 ± 0.377

0.579 ± 0.375

0.537 ± 0.371

1-2 Kb

0.503 ± 0.399

0.468 ± 0.388

0.491 ± 0.388

0.510 ± 0.379

0.471 ± 0.378

0.535 ± 0.375

0.500 ± 0.374

2-3 Kb

0.464 ± 0.396

0.44 ± 0.386

0.454 ± 0.385

0.461 ± 0.379

0.431 ± 0.375

0.510 ± 0.379

0.456 ± 0.374

3-4 Kb

0.445 ± 0.393

0.423 ± 0.38

0.425 ± 0.379

0.430 ± 0.376

0.401 ± 0.369

0.449 ± 0.381

0.427 ± 0.372

4-5 Kb

0.429 ± 0.391

0.413 ± 0.378

0.415 ± 0.38

0.413 ± 0.377

0.386 ± 0.367

0.434 ± 0.375

0.411 ± 0.371

5-6 Kb

0.413 ± 0.387

0.401 ± 0.376

0.394 ± 0.375

0.401 ± 0.373

0.369 ± 0.364

0.398 ± 0.370

0.394 ± 0.366

6-7 Kb

0.406 ± 0.386

0.387 ± 0.373

0.382 ± 0.37

0.387 ± 0.371

0.357 ± 0.361

0.396 ± 0.371

0.377 ± 0.361

7-8 Kb

0.394 ± 0.381

0.379 ± 0.372

0.382 ± 0.371

0.379 ± 0.371

0.344 ± 0.356

0.381 ± 0.364

0.369 ± 0.360

8-9 Kb

0.385 ± 0.38

0.373 ± 0.369

0.37 ± 0.367

0.364 ± 0.359

0.337 ± 0.354

0.372 ± 0.362

0.363 ± 0.358

9-10 Kb

0.39 ± 0.381

0.363 ± 0.365

0.36 ± 0.364

0.356 ± 0.362

0.333 ± 0.354

0.363 ± 0.362

0.358 ± 0.356

10-20 Kb

0.365 ± 0.372

0.341 ± 0.36

0.329 ± 0.355

0.317 ± 0.348

0.294 ± 0.338

0.317 ± 0.349

0.313 ± 0.343

20-30 Kb

0.322 ± 0.359

0.308 ± 0.347

0.291 ± 0.339

0.271 ± 0.328

0.251 ± 0.317

0.266 ± 0.325

0.269 ± 0.324

30-40 Kb

0.289 ± 0.349

0.289 ± 0.339

0.267 ± 0.327

0.245 ± 0.312

0.226 ± 0.302

0.234 ± 0.310

0.244 ± 0.310

40-50 Kb

0.283 ± 0.342

0.275 ± 0.332

0.249 ± 0.317

0.228 ± 0.304

0.206 ± 0.290

0.210 ± 0.292

0.226 ± 0.300

50-60 Kb

0.271 ± 0.336

0.266 ± 0.327

0.235 ± 0.308

0.211 ± 0.292

0.193 ± 0.280

0.200 ± 0.286

0.213 ± 0.290

60-70 Kb

0.259 ± 0.33

0.256 ± 0.322

0.225 ± 0.302

0.202 ± 0.287

0.184 ± 0.273

0.185 ± 0.273

0.203 ± 0.284

70-80 Kb

0.249 ± 0.324

0.249 ± 0.318

0.217 ± 0.297

0.192 ± 0.278

0.172 ± 0.264

0.177 ± 0.269

0.193 ± 0.276

80-90 Kb

0.242 ± 0.32

0.24 ± 0.314

0.21 ± 0.291

0.185 ± 0.275

0.165 ± 0.259

0.169 ± 0.259

0.189 ± 0.273

90-100 Kb

0.239 ± 0.319

0.236 ± 0.311

0.204 ± 0.288

0.180 ± 0.270

0.159 ± 0.253

0.161 ± 0.253

0.183 ± 0.269

100-200 Kb

0.212 ± 0.301

0.216 ± 0.299

0.182 ± 0.271

0.156 ± 0.249

0.138 ± 0.234

0.143 ± 0.238

0.166 ± 0.255

200-300 Kb

0.187 ± 0.283

0.197 ± 0.299

0.162 ± 0.253

0.135 ± 0.229

0.118 ± 0.213

0.127 ± 0.221

0.152 ± 0.242

300-400 Kb

0.175 ± 0.273

0.188 ± 0.278

0.152 ± 0.245

0.125 ± 0.219

0.109 ± 0.203

0.122 ± 0.216

0.145 ± 0.236

400-500 Kb

0.17 ± 0.269

0.183 ± 0.274

0.148 ± 0.241

0.121 ± 0.214

0.104 ± 0.197

0.118 ± 0.212

0.141 ± 0.232