Skip to main content

Advertisement

Table 3 Average r2 values and ± standard deviations over different physical distances, pooled over all autosomes, in seven Iranian cattle breeds

From: Comparison of linkage disequilibrium levels in Iranian indigenous cattle using whole genome SNPs data

SNP pairs Distance Breed
Sistani Kermani Najdi Taleshi Mazandarani Kurdi Sarabi
0-1 Kb 0.527 ± 0.396 0.499 ± 0.39 0.52 ± 0.387 0.546 ± 0.379 0.501 ± 0.377 0.579 ± 0.375 0.537 ± 0.371
1-2 Kb 0.503 ± 0.399 0.468 ± 0.388 0.491 ± 0.388 0.510 ± 0.379 0.471 ± 0.378 0.535 ± 0.375 0.500 ± 0.374
2-3 Kb 0.464 ± 0.396 0.44 ± 0.386 0.454 ± 0.385 0.461 ± 0.379 0.431 ± 0.375 0.510 ± 0.379 0.456 ± 0.374
3-4 Kb 0.445 ± 0.393 0.423 ± 0.38 0.425 ± 0.379 0.430 ± 0.376 0.401 ± 0.369 0.449 ± 0.381 0.427 ± 0.372
4-5 Kb 0.429 ± 0.391 0.413 ± 0.378 0.415 ± 0.38 0.413 ± 0.377 0.386 ± 0.367 0.434 ± 0.375 0.411 ± 0.371
5-6 Kb 0.413 ± 0.387 0.401 ± 0.376 0.394 ± 0.375 0.401 ± 0.373 0.369 ± 0.364 0.398 ± 0.370 0.394 ± 0.366
6-7 Kb 0.406 ± 0.386 0.387 ± 0.373 0.382 ± 0.37 0.387 ± 0.371 0.357 ± 0.361 0.396 ± 0.371 0.377 ± 0.361
7-8 Kb 0.394 ± 0.381 0.379 ± 0.372 0.382 ± 0.371 0.379 ± 0.371 0.344 ± 0.356 0.381 ± 0.364 0.369 ± 0.360
8-9 Kb 0.385 ± 0.38 0.373 ± 0.369 0.37 ± 0.367 0.364 ± 0.359 0.337 ± 0.354 0.372 ± 0.362 0.363 ± 0.358
9-10 Kb 0.39 ± 0.381 0.363 ± 0.365 0.36 ± 0.364 0.356 ± 0.362 0.333 ± 0.354 0.363 ± 0.362 0.358 ± 0.356
10-20 Kb 0.365 ± 0.372 0.341 ± 0.36 0.329 ± 0.355 0.317 ± 0.348 0.294 ± 0.338 0.317 ± 0.349 0.313 ± 0.343
20-30 Kb 0.322 ± 0.359 0.308 ± 0.347 0.291 ± 0.339 0.271 ± 0.328 0.251 ± 0.317 0.266 ± 0.325 0.269 ± 0.324
30-40 Kb 0.289 ± 0.349 0.289 ± 0.339 0.267 ± 0.327 0.245 ± 0.312 0.226 ± 0.302 0.234 ± 0.310 0.244 ± 0.310
40-50 Kb 0.283 ± 0.342 0.275 ± 0.332 0.249 ± 0.317 0.228 ± 0.304 0.206 ± 0.290 0.210 ± 0.292 0.226 ± 0.300
50-60 Kb 0.271 ± 0.336 0.266 ± 0.327 0.235 ± 0.308 0.211 ± 0.292 0.193 ± 0.280 0.200 ± 0.286 0.213 ± 0.290
60-70 Kb 0.259 ± 0.33 0.256 ± 0.322 0.225 ± 0.302 0.202 ± 0.287 0.184 ± 0.273 0.185 ± 0.273 0.203 ± 0.284
70-80 Kb 0.249 ± 0.324 0.249 ± 0.318 0.217 ± 0.297 0.192 ± 0.278 0.172 ± 0.264 0.177 ± 0.269 0.193 ± 0.276
80-90 Kb 0.242 ± 0.32 0.24 ± 0.314 0.21 ± 0.291 0.185 ± 0.275 0.165 ± 0.259 0.169 ± 0.259 0.189 ± 0.273
90-100 Kb 0.239 ± 0.319 0.236 ± 0.311 0.204 ± 0.288 0.180 ± 0.270 0.159 ± 0.253 0.161 ± 0.253 0.183 ± 0.269
100-200 Kb 0.212 ± 0.301 0.216 ± 0.299 0.182 ± 0.271 0.156 ± 0.249 0.138 ± 0.234 0.143 ± 0.238 0.166 ± 0.255
200-300 Kb 0.187 ± 0.283 0.197 ± 0.299 0.162 ± 0.253 0.135 ± 0.229 0.118 ± 0.213 0.127 ± 0.221 0.152 ± 0.242
300-400 Kb 0.175 ± 0.273 0.188 ± 0.278 0.152 ± 0.245 0.125 ± 0.219 0.109 ± 0.203 0.122 ± 0.216 0.145 ± 0.236
400-500 Kb 0.17 ± 0.269 0.183 ± 0.274 0.148 ± 0.241 0.121 ± 0.214 0.104 ± 0.197 0.118 ± 0.212 0.141 ± 0.232