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Table 3 Unbiased expected heterozygosity (he), observed heterozygosity (ho) and Hardy-Weinberg Equilibrium (HWE) p-values for SNPs in the PPARG, CEBPA and RXRA genes in an Argentinean crossbred population (Angus-Hereford-Limousin). A: purebred Angus; H. purebred Hereford; ¾A: 75 % Angus steers; ¾ H: 75 % Hereford steers; ½AH: 50 % Angus -50 % Hereford steers; LX: Limousine crossbred steers

From: Genetic characterisation of PPARG, CEBPA and RXRA, and their influence on meat quality traits in cattle

SNP Population
A H ¾A ¾ H
he ho HWE p value he ho HWE p-value he ho HWE p-value he ho HWE p-value
rs41610552 (PPARG) 0.44 0.50 0.49 0.30 0.36 0.56 0.36 0.33 0.63 0.22 0.25 1.00
rs207671117 (PPARG) 0.09 0.09 1.00 0.00 0.00 - 0.00 0.00 - 0.04 0.04 -
rs42016945 (PPARG) 0.44 0.41 0.73 0.34 0.42 0.55 0.44 0.30 0.10 0.31 0.29 1.00
rs210446561 (CEBPA) 0.38 0.50 0.15 0.20 0.21 1.00 0.22 0.25 1.00 0.25 0.29 1.00
rs207774429 (RXRA) 0.41 0.39 1.00 0.47 0.69 0.09 0.47 0.56 0.59 0.48 0.71 0.09
rs133517803 (RXRA) 0.44 0.37 0.31 0.11 0.12 1.00 0.45 0.67 0.01* 0.34 0.42 0.54
rs136289117 (RXRA) 0.02 0.02 - 0.04 0.04 - - - - - - -
rs209839910 (RXRA) 0.05 0.05 1.00 0.04 0.04 - 0.00 0.00 - 0.08 0.08 1.00
  ½AH LX     Global
  he ho HWE p-value he ho HWE p-value     he ho HWE p-value
rs41610552 (PPARG) 0.36 0.42 0.14 0.49 0.55 0.51     0.38 0.42 0.72
rs207671117 (PPARG) 0.06 0.06 1.00 0.12 0.12 1.00     0.06 0.06 1.00
rs42016945 (PPARG) 0.37 0.32 0.17 0.45 0.29 0.03*     0.40 0.33 0.16
rs210446561 (CEBPA) 0.19 0.21 1.00 0.16 0.17 1.00     0.24 0.28 0.99
rs207774429 (RXRA) 0.43 0.59 <0.01* 0.43 0.44 1.00     0.43 0.56 <0.01*
rs133517803 (RXRA) 0.36 0.38 0.77 0.50 0.60 0.33     0.40 0.42 0.34
rs136289117 (RXRA) - - - - - -     0.01 0.01 1.00
rs209839910 (RXRA) 0.03 0.03 1.00 0.08 0.08 1.00     0.04 0.04 1.00
  1. *Significant deviations from the theoretical proportions (P < 0.05)