|
SNP
|
BONF/BH adjusted p-values
|
Gene
|
Variation
|
|---|
|
WP
|
HP
|
HxJ P
|
|---|
|
rs43375517
|
0.06/0.06
|
0.01*/0.01
|
1/0.86
|
ARL4A
|
C/G, 5’UTR
|
|
rs41255693
|
0.33/0.09
|
0.43/0.09
|
1/0.87
|
SCD1
|
C/T, missense
|
|
rs29004488
|
0.40/0.09
|
1/0.50
|
0.27/0.14
|
LEP
|
T/C, missense
|
|
rs137651874
|
0.46/0.09
|
0.52/0.09
|
1/0.77
|
GH
|
G/A, intronic
|
|
rs132812135
|
0.47/0.09
|
1/0.20
|
1/0.66
|
OPN
|
A/C, 3’UTR
|
|
rs135164815
|
1/0.21
|
0.03*/0.02
|
0.98/0.20
|
PRLR
|
G/A, missense
|
|
rs43703011
|
1/0.21
|
1/0.26
|
0.94/0.20
|
CSN2
|
G/T, missense
|
|
rs43706485
|
1/0.22
|
0.07/0.02
|
1/0.30
|
LTF
|
C/G, 5’UTR
|
|
rs109191047
|
1/0.22
|
0.56/0.09
|
1/0.67
|
GH
|
A/C, synonymous
|
|
rs110930453
|
1/0.35
|
1/0.54
|
1/0.77
|
OPN
|
C/T, intronic
|
|
rs385640152
|
1/0.35
|
1/0.35
|
1/0.86
|
GHR
|
A/T, missense
|
|
rs110494133
|
1/0.35
|
1/0.60
|
1/0.53
|
PRL
|
C/T, intronic
|
|
rs132991801
|
1/0.36
|
1/0.60
|
1/0.77
|
UTMP
|
C/T, synonymous
|
|
rs211032652
|
1/0.36
|
1/0.26
|
1/0.86
|
PRL
|
G/A, synonymous
|
|
rs41595314
|
1/0.48
|
1/0.50
|
1/0.86
|
SNX13
|
A/T, intronic
|
|
rs42213673
|
1/0.53
|
1/0.60
|
1/0.86
|
ETV1
|
G/A, intronic
|
|
rs17870811
|
1/0.53
|
1/0.17
|
0.24/0.14
|
PPARGC1A
|
C/T, intronic
|
|
rs109579682
|
1/0.53
|
1/0.95
|
0.78/0.20
|
PPARGC1A
|
A/G, intronic
|
|
rs133669403
|
1/0.53
|
1/0.60
|
1/0.77
|
PPARGC1A
|
G/A, missense
|
|
rs43703015
|
1/0.53
|
1/0.34
|
1/0.77
|
CSN3
|
C/T, missense
|
|
rs41256920
|
1/0.86
|
1/0.60
|
1/0.67
|
LTF
|
C/A, 5’UTR
|
|
rs43703010
|
1/0.90
|
1/0.60
|
1/0.77
|
CSN1S1
|
A/G, missense
|
- *p < 0.05
- This Table indicates markers adjusted p-values based on Bonferroni correction (BONF) and Benjamini-Hochberg procedure (BH) for the whole (WP), Holstein (HP) and Holstein x Jersey (HxJ P) population analyses, corresponding gene names, and nucleotide changes implicated in the polymorphisms. SNPs in bold represent suggestive or significant associations with 305-day milk production
