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Table 2 SNP markers associated with milk production

From: Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

SNP

BONF/BH adjusted p-values

Gene

Variation

WP

HP

HxJ P

rs43375517

0.06/0.06

0.01*/0.01

1/0.86

ARL4A

C/G, 5’UTR

rs41255693

0.33/0.09

0.43/0.09

1/0.87

SCD1

C/T, missense

rs29004488

0.40/0.09

1/0.50

0.27/0.14

LEP

T/C, missense

rs137651874

0.46/0.09

0.52/0.09

1/0.77

GH

G/A, intronic

rs132812135

0.47/0.09

1/0.20

1/0.66

OPN

A/C, 3’UTR

rs135164815

1/0.21

0.03*/0.02

0.98/0.20

PRLR

G/A, missense

rs43703011

1/0.21

1/0.26

0.94/0.20

CSN2

G/T, missense

rs43706485

1/0.22

0.07/0.02

1/0.30

LTF

C/G, 5’UTR

rs109191047

1/0.22

0.56/0.09

1/0.67

GH

A/C, synonymous

rs110930453

1/0.35

1/0.54

1/0.77

OPN

C/T, intronic

rs385640152

1/0.35

1/0.35

1/0.86

GHR

A/T, missense

rs110494133

1/0.35

1/0.60

1/0.53

PRL

C/T, intronic

rs132991801

1/0.36

1/0.60

1/0.77

UTMP

C/T, synonymous

rs211032652

1/0.36

1/0.26

1/0.86

PRL

G/A, synonymous

rs41595314

1/0.48

1/0.50

1/0.86

SNX13

A/T, intronic

rs42213673

1/0.53

1/0.60

1/0.86

ETV1

G/A, intronic

rs17870811

1/0.53

1/0.17

0.24/0.14

PPARGC1A

C/T, intronic

rs109579682

1/0.53

1/0.95

0.78/0.20

PPARGC1A

A/G, intronic

rs133669403

1/0.53

1/0.60

1/0.77

PPARGC1A

G/A, missense

rs43703015

1/0.53

1/0.34

1/0.77

CSN3

C/T, missense

rs41256920

1/0.86

1/0.60

1/0.67

LTF

C/A, 5’UTR

rs43703010

1/0.90

1/0.60

1/0.77

CSN1S1

A/G, missense

  1. *p < 0.05
  2. This Table indicates markers adjusted p-values based on Bonferroni correction (BONF) and Benjamini-Hochberg procedure (BH) for the whole (WP), Holstein (HP) and Holstein x Jersey (HxJ P) population analyses, corresponding gene names, and nucleotide changes implicated in the polymorphisms. SNPs in bold represent suggestive or significant associations with 305-day milk production