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Table 2 SNP markers associated with milk production

From: Single nucleotide polymorphisms in candidate genes associated with milk yield in Argentinean Holstein and Holstein x Jersey cows

SNP BONF/BH adjusted p-values Gene Variation
WP HP HxJ P
rs43375517 0.06/0.06 0.01*/0.01 1/0.86 ARL4A C/G, 5’UTR
rs41255693 0.33/0.09 0.43/0.09 1/0.87 SCD1 C/T, missense
rs29004488 0.40/0.09 1/0.50 0.27/0.14 LEP T/C, missense
rs137651874 0.46/0.09 0.52/0.09 1/0.77 GH G/A, intronic
rs132812135 0.47/0.09 1/0.20 1/0.66 OPN A/C, 3’UTR
rs135164815 1/0.21 0.03*/0.02 0.98/0.20 PRLR G/A, missense
rs43703011 1/0.21 1/0.26 0.94/0.20 CSN2 G/T, missense
rs43706485 1/0.22 0.07/0.02 1/0.30 LTF C/G, 5’UTR
rs109191047 1/0.22 0.56/0.09 1/0.67 GH A/C, synonymous
rs110930453 1/0.35 1/0.54 1/0.77 OPN C/T, intronic
rs385640152 1/0.35 1/0.35 1/0.86 GHR A/T, missense
rs110494133 1/0.35 1/0.60 1/0.53 PRL C/T, intronic
rs132991801 1/0.36 1/0.60 1/0.77 UTMP C/T, synonymous
rs211032652 1/0.36 1/0.26 1/0.86 PRL G/A, synonymous
rs41595314 1/0.48 1/0.50 1/0.86 SNX13 A/T, intronic
rs42213673 1/0.53 1/0.60 1/0.86 ETV1 G/A, intronic
rs17870811 1/0.53 1/0.17 0.24/0.14 PPARGC1A C/T, intronic
rs109579682 1/0.53 1/0.95 0.78/0.20 PPARGC1A A/G, intronic
rs133669403 1/0.53 1/0.60 1/0.77 PPARGC1A G/A, missense
rs43703015 1/0.53 1/0.34 1/0.77 CSN3 C/T, missense
rs41256920 1/0.86 1/0.60 1/0.67 LTF C/A, 5’UTR
rs43703010 1/0.90 1/0.60 1/0.77 CSN1S1 A/G, missense
  1. *p < 0.05
  2. This Table indicates markers adjusted p-values based on Bonferroni correction (BONF) and Benjamini-Hochberg procedure (BH) for the whole (WP), Holstein (HP) and Holstein x Jersey (HxJ P) population analyses, corresponding gene names, and nucleotide changes implicated in the polymorphisms. SNPs in bold represent suggestive or significant associations with 305-day milk production