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Table 2 SNP markers associated with milk production
| SNP | BONF/BH adjusted p-values | Gene | Variation | ||
|---|---|---|---|---|---|
| WP | HP | HxJ P | |||
| rs43375517 | 0.06/0.06 | 0.01*/0.01 | 1/0.86 | ARL4A | C/G, 5’UTR |
| rs41255693 | 0.33/0.09 | 0.43/0.09 | 1/0.87 | SCD1 | C/T, missense |
| rs29004488 | 0.40/0.09 | 1/0.50 | 0.27/0.14 | LEP | T/C, missense |
| rs137651874 | 0.46/0.09 | 0.52/0.09 | 1/0.77 | GH | G/A, intronic |
| rs132812135 | 0.47/0.09 | 1/0.20 | 1/0.66 | OPN | A/C, 3’UTR |
| rs135164815 | 1/0.21 | 0.03*/0.02 | 0.98/0.20 | PRLR | G/A, missense |
| rs43703011 | 1/0.21 | 1/0.26 | 0.94/0.20 | CSN2 | G/T, missense |
| rs43706485 | 1/0.22 | 0.07/0.02 | 1/0.30 | LTF | C/G, 5’UTR |
| rs109191047 | 1/0.22 | 0.56/0.09 | 1/0.67 | GH | A/C, synonymous |
| rs110930453 | 1/0.35 | 1/0.54 | 1/0.77 | OPN | C/T, intronic |
| rs385640152 | 1/0.35 | 1/0.35 | 1/0.86 | GHR | A/T, missense |
| rs110494133 | 1/0.35 | 1/0.60 | 1/0.53 | PRL | C/T, intronic |
| rs132991801 | 1/0.36 | 1/0.60 | 1/0.77 | UTMP | C/T, synonymous |
| rs211032652 | 1/0.36 | 1/0.26 | 1/0.86 | PRL | G/A, synonymous |
| rs41595314 | 1/0.48 | 1/0.50 | 1/0.86 | SNX13 | A/T, intronic |
| rs42213673 | 1/0.53 | 1/0.60 | 1/0.86 | ETV1 | G/A, intronic |
| rs17870811 | 1/0.53 | 1/0.17 | 0.24/0.14 | PPARGC1A | C/T, intronic |
| rs109579682 | 1/0.53 | 1/0.95 | 0.78/0.20 | PPARGC1A | A/G, intronic |
| rs133669403 | 1/0.53 | 1/0.60 | 1/0.77 | PPARGC1A | G/A, missense |
| rs43703015 | 1/0.53 | 1/0.34 | 1/0.77 | CSN3 | C/T, missense |
| rs41256920 | 1/0.86 | 1/0.60 | 1/0.67 | LTF | C/A, 5’UTR |
| rs43703010 | 1/0.90 | 1/0.60 | 1/0.77 | CSN1S1 | A/G, missense |
